Cobalamin SNP Data

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Gene Symbol	Chromosome	Start	End	rs ID	Strand	NCBI ref	Observed	Function	Submitter Count	Submitter	Frequency Count	Allele Frequency
ABCD4	chr14	74752107	74752108	rs10141723	+	G	A/G	ncRNA,untranslated-3	5	1000GENOMES,ILLUMINA,KRIBB_YJKIM,TISHKOFF,WI_SSAHASNP,	2	0.01503
ABCD4	chr14	74759528	74759529	rs1052000	-	G	C/T	coding-synon,ncRNA	11	1000GENOMES,APPLERA_GI,BUSHMAN,CLINSEQ_SNP,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,LEE,NHLBI-ESP,SEATTLESEQ,TISHKOFF,	2	0.918756
ABCD4	chr14	74753140	74753141	rs1052006	-	C	A/G	ncRNA,untranslated-3	9	1000GENOMES,BCM_SSAHASNP,BUSHMAN,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,LEE,NHLBI-ESP,TISHKOFF,	2	0.056778
ABCD4	chr14	74753111	74753112	rs1052008	-	C	A/G	ncRNA,untranslated-3	7	1000GENOMES,BCM_SSAHASNP,ILLUMINA,ILLUMINA-UK,LEE,NHLBI-ESP,TISHKOFF,	2	0.054587
ABCD4	chr14	74753106	74753107	rs1052012	-	C	C/G	ncRNA,untranslated-3	7	1000GENOMES,BCM_SSAHASNP,ILLUMINA,ILLUMINA-UK,LEE,NHLBI-ESP,TISHKOFF,	2	0.057099
ABCD4	chr14	74753043	74753044	rs1052022	-	T	A/G	ncRNA,untranslated-3	6	1000GENOMES,BCM_SSAHASNP,ILLUMINA,ILLUMINA-UK,LEE,TISHKOFF,	2	0.978899
ABCD4	chr14	74752266	74752267	rs1052091	-	A	G/T	ncRNA,untranslated-3	7	1000GENOMES,HGBASE,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,LEE,PERLEGEN,	2	0.044304
ABCD4	chr14	74756671	74756672	rs111524952	+	C	C/G	intron	3	1000GENOMES,BUSHMAN,TISHKOFF,	2	0.984404
ABCD4	chr14	74753815	74753816	rs113034470	+	T	C/T	intron	4	1000GENOMES,BUSHMAN,GMI,SSMP,	2	0.026123
ABCD4	chr14	74761037	74761038	rs113189357	+	A	A/G	intron	5	1000GENOMES,BUSHMAN,GMI,SSMP,TISHKOFF,	2	0.965138
ABCD4	chr14	74758790	74758790	rs11410918	+	-	-/G	intron	4	1000GENOMES,DEVINE_LAB,LUNTER,TISHKOFF,	2	0.939394
ABCD4	chr14	74762852	74762853	rs114200701	+	A	A/G	intron	3	1000GENOMES,ILLUMINA,TISHKOFF,	2	0.987369
ABCD4	chr14	74755883	74755884	rs114317891	+	T	C/T	intron	2	1000GENOMES,TISHKOFF,	2	0.070993
ABCD4	chr14	74763674	74763675	rs114830371	+	A	A/C	intron	2	1000GENOMES,ILLUMINA,	2	0.981707
ABCD4	chr14	74758910	74758911	rs115255252	+	G	A/G	intron	2	1000GENOMES,TISHKOFF,	2	0.014808
ABCD4	chr14	74764489	74764490	rs117498612	+	C	C/G	intron	3	1000GENOMES,GMI,SSMP,	2	0.975196
ABCD4	chr14	74757711	74757712	rs117935406	+	A	A/G	intron	2	1000GENOMES,SSMP,	2	0.979983
ABCD4	chr14	74756708	74756709	rs11845047	+	A	A/G	intron	11	1000GENOMES,ABI,BUSHMAN,CLINSEQ_SNP,CSHL-HAPMAP,ENSEMBL,ILLUMINA,ILLUMINA-UK,NHLBI-ESP,PJP,TISHKOFF,	2	0.950759
ABCD4	chr14	74757018	74757019	rs11845976	+	C	C/T	coding-synon,ncRNA	15	1000GENOMES,ABI,APPLERA_GI,BUSHMAN,CANCER-GENOME,CLINSEQ_SNP,CSHL-HAPMAP,ENSEMBL,EXOME_CHIP,ILLUMINA,ILLUMINA-UK,NHLBI-ESP,PJP,SEATTLESEQ,TISHKOFF,	2	0.931957
ABCD4	chr14	74757373	74757374	rs11846127	+	C	C/G	intron	4	1000GENOMES,CSHL-HAPMAP,ILLUMINA-UK,TISHKOFF,	2	0.938991
ABCD4	chr14	74757291	74757292	rs11846150	+	G	A/G	intron	7	1000GENOMES,BUSHMAN,CSHL-HAPMAP,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,TISHKOFF,	2	0.095168
ABCD4	chr14	74751931	74751932	rs11847567	+	A	A/G	near-gene-3	8	1000GENOMES,ABI,CSHL-HAPMAP,HGSV,ILLUMINA,ILLUMINA-UK,PJP,TISHKOFF,	2	0.937356
ABCD4	chr14	74759624	74759625	rs138314552	+	C	C/T	intron	2	1000GENOMES,CLINSEQ_SNP,	2	0.989162
ABCD4	chr14	74754338	74754339	rs140425539	+	A	-/A	intron	4	1000GENOMES,LUNTER,TISHKOFF,WARNICH_LAB,	2	0.060147
ABCD4	chr14	74760903	74760904	rs142053045	+	C	C/T	intron	2	1000GENOMES,TISHKOFF,	2	0.949954
ABCD4	chr14	74756117	74756119	rs147794426	+	CA	-/CA	intron	4	1000GENOMES,LUNTER,TISHKOFF,WARNICH_LAB,	2	0.05877
ABCD4	chr14	74761218	74761218	rs149877508	+	-	-/GGT	intron,cds-indel	2	1000GENOMES,LUNTER,	2	0.939394
ABCD4	chr14	74760715	74760716	rs17099251	+	G	A/C/G	intron	6	1000GENOMES,BUSHMAN,GMI,PERLEGEN,SSMP,TISHKOFF,	3	0.048708
ABCD4	chr14	74764893	74764894	rs17099277	+	G	A/G	intron	5	1000GENOMES,ILLUMINA,KRIBB_YJKIM,PERLEGEN,TISHKOFF,	2	0.012227
ABCD4	chr14	74767510	74767511	rs17182959	+	G	A/G	intron	14	1000GENOMES,BCM-HGSC-SUB,BGI,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN,SSMP,TISHKOFF,	2	0.71402
ABCD4	chr14	74765416	74765417	rs188572837	+	G	A/G	intron	1	1000GENOMES,	2	0.014692
ABCD4	chr14	74751812	74751812	rs200081332	+	-	-/TAA	unknown	1	1000GENOMES,	2	0.325528
ABCD4	chr14	74760922	74760922	rs201244140	+	-	-/T	intron	3	1000GENOMES,LUNTER,TISHKOFF,	2	0.954086
ABCD4	chr14	74762797	74762798	rs2074945	-	C	A/G	intron	13	1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,GMI,HGBASE,HUMANGENOME_JCVI,PJP,RIKENSNPRC,SSMP,TISHKOFF,YUSUKE,	2	0.26441
ABCD4	chr14	74762045	74762046	rs2074946	-	T	A/C	intron	7	1000GENOMES,AFFY,HGBASE,KRIBB_YJKIM,RIKENSNPRC,SSMP,YUSUKE,	2	0.973539
ABCD4	chr14	74766351	74766352	rs2301345	-	A	C/T	coding-synon,intron	23	1000GENOMES,ABI,APPLERA_GI,BCM-HGSC-SUB,CANCER-GENOME,CGAP-GAI,CLINSEQ_SNP,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,MGC_GENOME_DIFF,NHLBI-ESP,PERLEGEN,PJP,SEATTL	2	0.283276
ABCD4	chr14	74766079	74766080	rs2301346	-	T	A/G	intron	17	1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,PERLEGEN,PJP,RIKENSNPRC,SSAHASNP,TISHKOFF,YUSUKE,	2	0.832013
ABCD4	chr14	74765892	74765893	rs2301347	-	C	G/T	intron	15	1000GENOMES,ABI,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,PERLEGEN,PJP,SSMP,TISHKOFF,YUSUKE,	2	0.758829
ABCD4	chr14	74752901	74752902	rs2466	+	A	A/C	ncRNA,untranslated-3	22	1000GENOMES,ABI,BCMHGSC_JDW,BCM_SSAHASNP,BGI,BUSHMAN,CSHL-HAPMAP,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,LEE,PERLEGEN,PJP,RIKENSNPRC,SI_EXO,SSAHASNP,SSMP,TISHKOFF,WIAF,	2	0.729123
ABCD4	chr14	74756602	74756603	rs3213498	-	C	A/G	intron	5	1000GENOMES,BUSHMAN,GMI,SSMP,YUSUKE,	2	0.026135
ABCD4	chr14	74756538	74756539	rs3213499	-	A	C/G/T	intron	18	1000GENOMES,ABI,BCM-HGSC-SUB,BUSHMAN,COMPLETE_GENOMICS,ENSEMBL,GMI,HGSV,HUMANGENOME_JCVI,ILLUMINA,ILLUMINA-UK,KRIBB_YJKIM,PERLEGEN,PJP,RIKENSNPRC,SSMP,TISHKOFF,YUSUKE,	3	0.348274
ABCD4	chr14	74765819	74765820	rs3216812	-	A	-/T	intron	4	1000GENOMES,LUNTER,SSMP,YUSUKE,	2	0.018366
ABCD4	chr14	74763063	74763064	rs34992370	+	C	C/T	ncRNA,missense	13	1000GENOMES,APPLERA_GI,BUSHMAN,CANCER-GENOME,CLINSEQ_SNP,EXOME_CHIP,HGSV,ILLUMINA,ILLUMINA-UK,NHLBI-ESP,PERLEGEN,SEATTLESEQ,TISHKOFF,	2	0.931216
ABCD4	chr14	74759058	74759059	rs35073715	+	G	C/G	ncRNA,missense	8	1000GENOMES,APPLERA_GI,CLINSEQ_SNP,EXOME_CHIP,GMI,ILLUMINA,NHLBI-ESP,PERLEGEN,	2	0.018426
ABCD4	chr14	74766340	74766341	rs35417609	+	A	A/G	coding-synon,intron	6	1000GENOMES,APPLERA_GI,BUSHMAN,ILLUMINA,NHLBI-ESP,TISHKOFF,	2	0.986923
ABCD4	chr14	74763085	74763086	rs36031534	+	G	C/G	coding-synon,ncRNA	11	1000GENOMES,APPLERA_GI,BUSHMAN,CANCER-GENOME,CLINSEQ_SNP,HGSV,ILLUMINA,ILLUMINA-UK,NHLBI-ESP,SEATTLESEQ,TISHKOFF,	2	0.068139
ABCD4	chr14	74761583	74761584	rs3742800	-	A	C/T	intron	16	1000GENOMES,ABI,AFFY,BCM-HGSC-SUB,COMPLETE_GENOMICS,ENSEMBL,GMI,ILLUMINA,KRIBB_YJKIM,PERLEGEN,PJP,RIKENSNPRC,SSMP,TISHKOFF,WI_SSAHASNP,YUSUKE,	2	0.451372
ABCD4	chr14	74759005	74759006	rs3742801	-	C	A/G	ncRNA,missense	22	1000GENOMES,ABI,AFFY,APPLERA_GI,BCM-HGSC-SUB,CLINSEQ_SNP,COMPLETE_GENOMICS,ENSEMBL,EXOME_CHIP,GMI,HUMANGENOME_JCVI,ILLUMINA,KRIBB_YJKIM,MGC_GENOME_DIFF,NHLBI-ESP,PERLEGEN,RIKENSNPRC,SEATTLESEQ,SI_EXO,	3	0.289501
ABCD4	chr14	74753566	74753567	rs3742802	-	C	A/G	intron	6	1000GENOMES,ILLUMINA,NHLBI-ESP,RIKENSNPRC,SSMP,YUSUKE,	2	0.042571
ABCD4	chr14	74753362	74753363	rs3742803	-	G	C/T	intron	11	1000GENOMES,BUSHMAN,CLINSEQ_SNP,GMI,ILLUMINA,KRIBB_YJKIM,NHLBI-ESP,PERLEGEN,RIKENSNPRC,SSMP,YUSUKE,	2	0.977697

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