rC
miRNA Cluster Details
miRNA Cluster
miRNA Cluster : hsa-mir-3179-1/mir-3180-1
Chromosome : chr16
Genomic Location : 14901508-14911313
No. of Candidates : 3
TSS GRCh19 : 14927577
TSS GRCh38 : 14833720
miRNA Cluster Candidates
| miRNA | miRBase ID | Chromosome | Start | End | Strand |
|---|---|---|---|---|---|
| hsa-mir-3179-1 | MI0014213 | Chr16 | 14901508 | 14901591 | + |
| hsa-mir-3670-1 | MI0016071 | Chr16 | 14907717 | 14907781 | + |
| hsa-mir-3180-1 | MI0014214 | Chr16 | 14911220 | 14911313 | + |
miRNA Cluster and CNV co-localization
| Cancer | Abberation Kind | Chromosome | CNV Start | CNV End | Size [bp] | Overlap [bp] |
|---|---|---|---|---|---|---|
| ACC | Amp | chr16 | 9886060 | 18929351 | 8960757 | 9805 |
| BRCA | Amp | chr16 | 603459 | 31838978 | 31196841 | 9805 |
| KIPAN | Amp | chr16 | 14657199 | 19442234 | 4702501 | 9805 |
| KIRC | Amp | chr16 | 14538074 | 19635419 | 5014811 | 9805 |
| KIRP | Amp | chr16 | 10274036 | 30308694 | 19952123 | 9805 |
| OV | Amp | chr16 | 14657199 | 18797068 | 4057335 | 9805 |
| PRAD | Amp | chr16 | 14653245 | 18797081 | 4061302 | 9805 |
| SARC | Amp | chr16 | 14657199 | 18797081 | 4057348 | 9805 |
| UCS | Amp | chr16 | 14653245 | 18797081 | 4061302 | 9805 |
Genome Browser
Chromosome Fragile site Association
Fragile Site: FRA16A
Location : chr16:14800001-16800000
Length : 2000000 bp
Frequency : Rare
PMID : 2714795