Folate SNPs in CpG Data

Gene Symbol	Chromosome	CpG Start	CpG End	CpG Count	SNP Start	SNP End	rsID	Strand	ref NCBI	Observed	C+G Count	CpG%	GC%	Observed-Expected Ratio	Function
SLC46A1	chr8	104426894	104427823	CpG:98	104427338	104427339	rs146161228	+	G	A/G	593	21.1	63.8	1.04	ncRNA,misse
SLC46A1	chr8	104426894	104427823	CpG:98	104427344	104427345	rs186572903	+	A	A/G	593	21.1	63.8	1.04	ncRNA,misse
SLC46A1	chr8	104426894	104427823	CpG:98	104427349	104427350	rs140179211	+	G	A/G	593	21.1	63.8	1.04	coding-syno
SLC46A1	chr8	104426894	104427823	CpG:98	104427353	104427354	rs146475888	+	C	C/T	593	21.1	63.8	1.04	ncRNA,misse
SLC46A1	chr8	104426894	104427823	CpG:98	104427358	104427359	rs3134295	+	A	A/C	593	21.1	63.8	1.04	ncRNA,misse
SLC46A1	chr8	104426894	104427823	CpG:98	104427364	104427365	rs372650826	+	C	A/C	593	21.1	63.8	1.04	ncRNA,nonse
SLC46A1	chr8	104426894	104427823	CpG:98	104427365	104427366	rs370523537	+	G	A/G	593	21.1	63.8	1.04	ncRNA,misse
SLC46A1	chr8	104426894	104427823	CpG:98	104427367	104427368	rs374192461	+	C	C/G	593	21.1	63.8	1.04	coding-syno
SLC46A1	chr8	104426894	104427823	CpG:98	104427372	104427373	rs140524999	+	C	C/T	593	21.1	63.8	1.04	ncRNA,misse
SLC46A1	chr8	104426894	104427823	CpG:98	104427387	104427388	rs201140690	+	T	G/T	593	21.1	63.8	1.04	ncRNA,misse
SLC46A1	chr8	104426894	104427823	CpG:98	104427393	104427394	rs374464432	+	G	A/G	593	21.1	63.8	1.04	ncRNA,misse
SLC46A1	chr8	104426894	104427823	CpG:98	104427409	104427410	rs150014655	+	C	C/T	593	21.1	63.8	1.04	coding-syno
SLC46A1	chr8	104426894	104427823	CpG:98	104427411	104427412	rs368359478	+	C	C/T	593	21.1	63.8	1.04	ncRNA,misse
SLC46A1	chr8	104426894	104427823	CpG:98	104427420	104427421	rs371786632	+	G	A/G	593	21.1	63.8	1.04	ncRNA,misse
SLC46A1	chr8	104426894	104427823	CpG:98	104427423	104427424	rs145230539	+	C	C/G	593	21.1	63.8	1.04	ncRNA,misse
SLC46A1	chr8	104426894	104427823	CpG:98	104427427	104427428	rs142367101	+	C	A/C	593	21.1	63.8	1.04	coding-syno
SLC46A1	chr8	104426894	104427823	CpG:98	104427449	104427450	rs115332818	+	C	C/T	593	21.1	63.8	1.04	ncRNA,misse
SLC46A1	chr8	104426894	104427823	CpG:98	104427470	104427471	rs138240593	+	A	A/G	593	21.1	63.8	1.04	ncRNA,misse
SLC46A1	chr8	104426894	104427823	CpG:98	104427479	104427480	rs142266909	+	G	C/G	593	21.1	63.8	1.04	ncRNA,misse
SLC46A1	chr8	104426894	104427823	CpG:98	104427483	104427484	rs370976960	+	C	C/T	593	21.1	63.8	1.04	ncRNA,misse
SLC46A1	chr8	104426894	104427823	CpG:98	104427495	104427496	rs375532699	+	A	A/T	593	21.1	63.8	1.04	ncRNA,misse
SLC46A1	chr8	104426894	104427823	CpG:98	104427511	104427512	rs199976025	+	C	C/T	593	21.1	63.8	1.04	coding-syno
SLC46A1	chr8	104426894	104427823	CpG:98	104427540	104427541	rs3134296	+	C	C/T	593	21.1	63.8	1.04	ncRNA,misse
SLC46A1	chr8	104426894	104427823	CpG:98	104427543	104427544	rs148247595	+	C	C/G	593	21.1	63.8	1.04	ncRNA,misse
SLC46A1	chr8	104426894	104427823	CpG:98	104427551	104427552	rs141239140	+	C	C/G	593	21.1	63.8	1.04	ncRNA,misse
SLC46A1	chr8	104426894	104427823	CpG:98	104427552	104427553	rs199979128	+	G	G/T	593	21.1	63.8	1.04	ncRNA,misse
SLC46A1	chr8	104426894	104427823	CpG:98	104427562	104427563	rs201933283	+	T	A/T	593	21.1	63.8	1.04	ncRNA,misse
TCN1	chr17	26732175	26732391	CpG:18	26732202	26732203	rs189103810	+	A	A/T	142	16.7	65.7	0.77	missense
TCN1	chr17	26732175	26732391	CpG:18	26732248	26732249	rs281875210	-	C	G/T	142	16.7	65.7	0.77	missense
TCN1	chr17	26732175	26732391	CpG:18	26732275	26732276	rs80338771	-	C	C/G	142	16.7	65.7	0.77	missense
TCN1	chr17	26732175	26732391	CpG:18	26732288	26732289	rs61732735	+	G	C/G	142	16.7	65.7	0.77	coding-syno
TCN1	chr17	26732175	26732391	CpG:18	26732300	26732301	rs376191377	+	C	C/T	142	16.7	65.7	0.77	coding-syno
TCN1	chr17	26732175	26732391	CpG:18	26732325	26732326	rs369191223	+	A	A/G	142	16.7	65.7	0.77	missense
TCN1	chr17	26732175	26732391	CpG:18	26732336	26732337	rs375678730	+	G	A/G	142	16.7	65.7	0.77	coding-syno
TCN1	chr17	26732175	26732391	CpG:18	26732348	26732349	rs372432334	+	C	C/T	142	16.7	65.7	0.77	coding-syno
TCN1	chr17	26732175	26732391	CpG:18	26732373	26732374	rs369959215	+	C	C/T	142	16.7	65.7	0.77	missense
TCN1	chr17	26732175	26732391	CpG:18	26732377	26732378	rs80338770	-	G	A/C/T	142	16.7	65.7	0.77	missense
TCN1	chr17	26732175	26732391	CpG:18	26732385	26732386	rs201076728	+	C	C/T	142	16.7	65.7	0.77	missense
TCN1	chr17	26732812	26733396	CpG:64	26732814	26732815	rs41297073	-	C	-/G	429	21.9	73.5	0.81	intron
TCN1	chr17	26732812	26733396	CpG:64	26732862	26732863	rs181017052	+	A	A/C	429	21.9	73.5	0.81	intron
TCN1	chr17	26732812	26733396	CpG:64	26732887	26732888	rs185140572	+	C	C/T	429	21.9	73.5	0.81	intron
TCN1	chr17	26732812	26733396	CpG:64	26732908	26732909	rs375346186	+	A	A/G	429	21.9	73.5	0.81	missense
TCN1	chr17	26732812	26733396	CpG:64	26732934	26732936	rs154623632	-	GC	AA/GC	429	21.9	73.5	0.81	nonsense
TCN1	chr17	26732812	26733396	CpG:64	26732938	26732939	rs80338769	-	C	-/G	429	21.9	73.5	0.81	frameshift
TCN1	chr17	26732812	26733396	CpG:64	26732939	26732940	rs375000218	+	C	A/C	429	21.9	73.5	0.81	missense
TCN1	chr17	26732812	26733396	CpG:64	26732943	26732944	rs41297071	-	C	C/G/T	429	21.9	73.5	0.81	missense
TCN1	chr17	26732812	26733396	CpG:64	26732974	26732975	rs41297069	-	G	C/T	429	21.9	73.5	0.81	missense
TCN1	chr17	26732812	26733396	CpG:64	26733035	26733036	rs368562168	+	T	A/T	429	21.9	73.5	0.81	missense
TCN1	chr17	26732812	26733396	CpG:64	26733047	26733048	rs41297067	-	C	A/G	429	21.9	73.5	0.81	missense
TCN1	chr17	26732812	26733396	CpG:64	26733110	26733111	rs41297065	-	G	C/T	429	21.9	73.5	0.81	missense
TCN1	chr17	26732812	26733396	CpG:64	26733114	26733115	rs375478405	+	G	A/G	429	21.9	73.5	0.81	coding-syno
TYMS	chr18	657401	658745	CpG:141	657609	657610	rs367994610	+	G	C/G	921	21	68.5	0.9	intron,untr
TYMS	chr18	657401	658745	CpG:141	657645	657730	rs34743033	+	CCGCGCCACTT	lengthTooLo	921	21	68.5	0.9	unknown
TYMS	chr18	657401	658745	CpG:141	657645	657701	rs45445694	+	CCGCGCCACTT	lengthTooLo	921	21	68.5	0.9	unknown
TYMS	chr18	657401	658745	CpG:141	657656	657657	rs183205964	+	G	C/G	921	21	68.5	0.9	intron,untr
TYMS	chr18	657401	658745	CpG:141	657684	657685	rs2853542	+	G	C/G	921	21	68.5	0.9	intron,untr
TYMS	chr18	657401	658745	CpG:141	657784	657785	rs188268314	+	C	C/T	921	21	68.5	0.9	intron,miss
TYMS	chr18	657401	658745	CpG:141	657819	657820	rs201958231	+	G	G/T	921	21	68.5	0.9	coding-syno
TYMS	chr18	657401	658745	CpG:141	657933	657934	rs201007284	+	C	C/G	921	21	68.5	0.9	coding-syno
TYMS	chr18	657401	658745	CpG:141	658000	658001	rs73366471	+	G	A/G	921	21	68.5	0.9	intron,nons
TYMS	chr18	657401	658745	CpG:141	658023	658024	rs200637090	+	G	A/G	921	21	68.5	0.9	intron,miss
TYMS	chr18	657401	658745	CpG:141	658034	658035	rs77400748	+	A	A/G	921	21	68.5	0.9	coding-syno
TYMS	chr18	657401	658745	CpG:141	658047	658048	rs190076880	+	C	C/G	921	21	68.5	0.9	intron,miss
TYMS	chr18	657401	658745	CpG:141	658056	658057	rs370824496	+	A	A/G	921	21	68.5	0.9	intron,miss
TYMS	chr18	657401	658745	CpG:141	658063	658064	rs2853533	+	G	C/G	921	21	68.5	0.9	intron,miss
TYMS	chr18	657401	658745	CpG:141	658065	658066	rs368711614	+	G	A/G	921	21	68.5	0.9	intron,miss
TYMS	chr18	657401	658745	CpG:141	658071	658072	rs371383896	+	G	G/T	921	21	68.5	0.9	intron,miss
TYMS	chr18	657401	658745	CpG:141	658096	658097	rs373697938	+	A	A/G	921	21	68.5	0.9	intron,miss
TYMS	chr18	657401	658745	CpG:141	658108	658109	rs151221029	+	G	G/T	921	21	68.5	0.9	intron,miss
TYMS	chr18	657401	658745	CpG:141	658120	658121	rs201596180	+	T	C/T	921	21	68.5	0.9	intron,miss
TYMS	chr18	657401	658745	CpG:141	658146	658147	rs182344736	+	C	A/C	921	21	68.5	0.9	intron,miss
TYMS	chr18	657401	658745	CpG:141	658148	658149	rs371604300	+	C	C/T	921	21	68.5	0.9	coding-syno
TYMS	chr18	657401	658745	CpG:141	658169	658170	rs28602966	+	G	G/T	921	21	68.5	0.9	intron,nons
TYMS	chr18	657401	658745	CpG:141	658286	658287	rs142008740	+	T	C/T	921	21	68.5	0.9	intron,untr
TYMS	chr18	657401	658745	CpG:141	658331	658332	rs72634355	+	C	C/T	921	21	68.5	0.9	intron,untr
TYMS	chr18	657401	658745	CpG:141	658332	658333	rs376122364	+	C	C/T	921	21	68.5	0.9	intron,untr
TYMS	chr18	657401	658745	CpG:141	658416	658417	rs75047328	+	G	G/T	921	21	68.5	0.9	intron,near
TYMS	chr18	657401	658745	CpG:141	658422	658423	rs3891167	+	A	A/G	921	21	68.5	0.9	intron,near
TYMS	chr18	657401	658745	CpG:141	658429	658430	rs2847612	+	G	C/G	921	21	68.5	0.9	intron,near
TYMS	chr18	657401	658745	CpG:141	658446	658447	rs369135185	+	C	C/T	921	21	68.5	0.9	intron,near
TYMS	chr18	657401	658745	CpG:141	658534	658540	rs111834869	+	AGTATA	-/AGTATA	921	21	68.5	0.9	intron,near
TYMS	chr18	657401	658745	CpG:141	658537	658543	rs77497635	+	ATAAGT	-/ATAAGT	921	21	68.5	0.9	intron,near
TYMS	chr18	657401	658745	CpG:141	658589	658590	rs192603316	+	C	C/T	921	21	68.5	0.9	intron,near

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